Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2363KEGG: sme:SMa1641 probable NreB protein. (307 aa)    
Predicted Functional Partners:
Meso_2362
KEGG: sme:SMa1641 probable NreB protein.
 
     0.905
Meso_2361
KEGG: ava:Ava_1266 xenobiotic compound monooxygenase, DszA family, A subunit.
       0.608
Meso_0558
PFAM: protein of unknown function DUF156; KEGG: psb:Psyr_2932 protein of unknown function DUF156.
 
     0.579
Meso_2359
PFAM: aminotransferase, class IV; KEGG: bms:BRA0934 D-alanine aminotransferase, putative.
  
    0.481
Meso_2580
TIGRFAM: amino acid adenylation domain; PFAM: beta-ketoacyl synthase AMP-dependent synthetase and ligase acyl transferase region condensation domain aminotransferase class-III phosphopantetheine-binding; KEGG: rpa:RPA3339 possible polyketide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.480
Meso_2364
TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: rru:Rru_A1613 cystathionine beta-lyase.
       0.468
Meso_2365
PFAM: peptidase M24; KEGG: rpb:RPB_4421 peptidase M24.
       0.468
Meso_2366
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: reu:Reut_B3820 argininosuccinate lyase; Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.
       0.468
Meso_2360
Uncharacterized protein putative amidase-like protein; KEGG: pma:Pro0264 predicted amidase.
       0.457
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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