Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_2367PFAM: regulatory proteins, IclR; KEGG: rpb:RPB_4432 transcriptional regulator, IclR family. (253 aa)    
Predicted Functional Partners:
Meso_2307
Transcriptional regulator, IclR family; PFAM: regulatory proteins, IclR Helix-turn-helix, type 11; KEGG: sma:SAV3701 putative IclR-family transcriptional regulator.
  
     0.774
Meso_3296
PFAM: regulatory proteins, IclR; KEGG: bur:Bcep18194_B0283 transcriptional regulator, IclR family.
  
     0.772
Meso_3303
Transcriptional regulator, IclR family; PFAM: regulatory proteins, IclR Helix-turn-helix, type 11; KEGG: sth:STH2538 transcriptional regulator.
  
     0.759
Meso_2364
TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: rru:Rru_A1613 cystathionine beta-lyase.
       0.530
Meso_2365
PFAM: peptidase M24; KEGG: rpb:RPB_4421 peptidase M24.
       0.530
Meso_2366
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: reu:Reut_B3820 argininosuccinate lyase; Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.
       0.530
Meso_0051
Transcriptional regulator, IclR family; PFAM: Helix-turn-helix, type 11; SMART: regulatory proteins, IclR; KEGG: dar:Daro_0897 regulatory proteins, IclR.
  
     0.421
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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