Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_2372TIGRFAM: Twin-arginine translocation pathway signal; KEGG: ret:RHE_PC00028 probable polyamine ABC transporter, substrate-binding protein. (364 aa)    
Predicted Functional Partners:
Meso_1937
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll6253 ABC transporter permease protein.
 
 0.947
Meso_2370
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3546 ABC transporter permease protein.
 
 0.887
Meso_1862
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppu:PP0414 polyamine ABC transporter, permease protein.
 
 0.837
Meso_2371
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPOA0383 spermidine/putrescine ABC transporter, permease protein.
 
 
 0.802
Meso_3746
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi00400 putative spermidineputrescine ABC transporter permease protein; RBL01738.
 
 0.726
potA-3
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.706
Meso_3958
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01474 ABC-type spermidine/putrescine transport system, permease component II.
 
 0.648
Meso_0166
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr6537 ABC transporter, polyamine transport protein, permease protein.
 
 0.640
Meso_1863
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_1234 motC.
 
 
 0.634
Meso_3745
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3517 ABC polyamine/opine transporter, inner membrane subunit.
 
 
 0.616
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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