Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_2380PFAM: regulatory proteins, IclR; KEGG: rpb:RPB_4432 transcriptional regulator, IclR family. (254 aa)    
Predicted Functional Partners:
Meso_3613
Transcriptional regulator, IclR family; PFAM: regulatory proteins, IclR; KEGG: atc:AGR_L_119 hypothetical protein.
  
     0.767
Meso_3303
Transcriptional regulator, IclR family; PFAM: regulatory proteins, IclR Helix-turn-helix, type 11; KEGG: sth:STH2538 transcriptional regulator.
  
     0.759
Meso_2381
PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: reu:Reut_A1355 cystathionine beta-lyase, bacterial.
       0.524
Meso_2382
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN0397 dipeptide transport system permease protein dppB.
       0.524
Meso_2383
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll2866 ABC transporter permease protein.
       0.524
Meso_2384
KEGG: pst:PSPTO2573 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase.
       0.524
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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