Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_2393PFAM: NAD/NADP octopine/nopaline dehydrogenase NAD-dependent glycerol-3-phosphate dehydrogenase-like Ketopantoate reductase ApbA/PanE-like; KEGG: sth:STH257 NAD/NADP octopine/nopaline dehydrogenase. (359 aa)    
Predicted Functional Partners:
Meso_2395
PFAM: peptidase M24; KEGG: dra:DR1246 proline dipeptidase.
 
     0.730
Meso_2394
KEGG: bbr:BB1105 hypothetical protein.
  
   0.723
der
Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
  
 0.721
Meso_2396
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: cgb:cg2635 chloromuconate cycloisomerase.
 
     0.714
Meso_2392
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: reu:Reut_B3820 argininosuccinate lyase; Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.
  
    0.620
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
  
 0.584
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
  
    0.535
Meso_0828
Hypothetical protein; KEGG: bbr:BB4774 putative iron(III)-binding periplasmic protein precursor.
 
     0.511
Meso_0829
PFAM: peptidase M24; KEGG: rsp:RSP_3444 putative Xaa-Pro aminopeptidase.
  
     0.480
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: mlo:mll5053 phenylalanine-tRNA ligase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
  
 0.464
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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