Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2394KEGG: bbr:BB1105 hypothetical protein. (358 aa)    
Predicted Functional Partners:
Meso_2395
PFAM: peptidase M24; KEGG: dra:DR1246 proline dipeptidase.
       0.727
Meso_2393
PFAM: NAD/NADP octopine/nopaline dehydrogenase NAD-dependent glycerol-3-phosphate dehydrogenase-like Ketopantoate reductase ApbA/PanE-like; KEGG: sth:STH257 NAD/NADP octopine/nopaline dehydrogenase.
  
   0.723
Meso_2396
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: cgb:cg2635 chloromuconate cycloisomerase.
       0.717
Meso_1482
KEGG: bmb:BruAb1_1334 hypothetical acid-shock protein.
     
  0.648
folE
PFAM: GTP cyclohydrolase I; KEGG: mlo:mlr0922 GTP cyclohydrolase I.
   
   0.597
Meso_2392
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: reu:Reut_B3820 argininosuccinate lyase; Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.
  
  
 0.589
Meso_1055
KEGG: eba:p2A115 hypothetical protein, potential permease subunit.
  
     0.573
Meso_2209
KEGG: mlo:mll2809 hypothetical protein.
  
 
  0.489
Meso_2397
PFAM: protein of unknown function DUF112, transmembrane; KEGG: rsp:RSP_3409 TRAP-T family transporter, large (12 TMs) inner membrane subunit.
       0.472
Meso_2398
Hypothetical protein.
       0.472
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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