Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2400PFAM: Endoribonuclease L-PSP; KEGG: son:SO0337 hypothetical translation initiation inhibitor, YjgF family. (116 aa)    
Predicted Functional Partners:
Meso_1930
PFAM: Endoribonuclease L-PSP; KEGG: bja:bll7189 hypothetical protein.
  
     0.771
Meso_2401
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: hsa:54363 hydroxyacid oxidase (glycolate oxidase) 1.
  
    0.763
Meso_2397
PFAM: protein of unknown function DUF112, transmembrane; KEGG: rsp:RSP_3409 TRAP-T family transporter, large (12 TMs) inner membrane subunit.
       0.412
Meso_2398
Hypothetical protein.
       0.412
Meso_2399
PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A1912 uncharacterized protein UPF0065.
       0.412
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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