Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2424PFAM: UV-endonuclease UvdE; KEGG: bsu:BG11309 similar to UV-endonuclease. (353 aa)    
Predicted Functional Partners:
Meso_2423
PFAM: phosphoesterase, RecJ-like; KEGG: mma:MM0213 putative single-stranded-DNA-specific exonuclease.
 
   
 0.852
Meso_2422
KEGG: rsp:RSP_3230 hypothetical protein.
 
     0.712
Meso_3529
PFAM: beta-lactamase-like; KEGG: dra:DR0658 hypothetical protein.
  
     0.575
Meso_0154
Hypothetical protein.
  
     0.531
Meso_2425
PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: rpb:RPB_4670 cytochrome bd ubiquinol oxidase, subunit I.
  
    0.503
Meso_2426
TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: rpa:RPA4794 putative cytochrome bd-quinol oxidase subunit II.
  
    0.477
Meso_1876
PFAM: manganese containing catalase; KEGG: ana:alr0998 putative catalase.
  
     0.453
Meso_4077
Putative PAS/PAC sensor protein; SMART: PAS; KEGG: sco:SCO3691 regulatory protein.
 
     0.408
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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