Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2443KEGG: sil:SPO1805 hypothetical protein. (180 aa)    
Predicted Functional Partners:
Meso_2442
KEGG: bja:bll5483 hypothetical protein.
 
    0.959
Meso_2444
KEGG: bja:bll5482 hypothetical protein.
 
     0.950
Meso_2445
KEGG: mag:amb2667 molybdopterin-guanine dinucleotide biosynthesis protein A.
 
     0.950
Meso_2446
KEGG: bja:bll5481 hypothetical protein.
 
     0.949
Meso_2441
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: bja:blr5484 putative ferredoxin.
 
     0.907
Meso_2447
PFAM: cytoplasmic chaperone TorD; KEGG: bja:bll5480 putative chaperone.
 
     0.892
Meso_2449
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region molybdopterin oxidoreductase Fe4S4 region; KEGG: mag:amb2671 anaerobic dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.863
Meso_2450
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: bja:bll5476 formate dehydrogenase iron-sulfur subunit.
 
     0.863
Meso_2451
TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: bja:bll5475 putative formate dehydrogenase.
 
     0.839
Meso_2440
WD-40 repeat-containing protein; PFAM: WD-40 repeat cytochrome c, class I; KEGG: bja:bll5485 hypothetical protein.
 
     0.755
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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