Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_2455PFAM: regulatory protein, MarR; KEGG: mlo:mll8302 transcriptional regulator. (148 aa)    
Predicted Functional Partners:
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
 
     0.857
Meso_2885
TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH01745 probable 4-hydroxyphenylpyruvate dioxygenase protein.
 
    0.687
Meso_3563
TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase-like; KEGG: mlo:mlr1135 maleylacetoacetate isomerase.
 
     0.600
Meso_0055
TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase-like; KEGG: bbr:BB3255 putative glutathione-S-transferase.
 
     0.583
Meso_2457
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR Tetratricopeptide TPR_4; KEGG: sco:SCO5506 regulatory protein.
  
  
 0.420
Meso_2887
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mlo:mlr8306 hypothetical protein.
 
     0.417
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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