Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_2478KEGG: bja:bll3781 hypothetical protein. (124 aa)    
Predicted Functional Partners:
Meso_2476
PFAM: cytochrome c oxidase, subunit III; KEGG: mlo:mlr1042 cytochrome c oxidase subunit III.
 
     0.946
Meso_2477
PFAM: cytochrome c oxidase, subunit III; KEGG: mlo:mlr1043 cytochrome c oxidase subunit III.
 
     0.946
Meso_2475
PFAM: cytochrome c oxidase, subunit I; KEGG: sme:SMc01983 cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
     0.917
Meso_2474
PFAM: cytochrome c oxidase, subunit II; KEGG: mlo:mlr1039 cytochrome c oxidase subunit II.
 
     0.895
Meso_1108
KEGG: ret:RHE_CH01272 hypothetical protein.
  
     0.505
Meso_2166
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
     
  0.500
Meso_1466
KEGG: sme:SMc01562 hypothetical protein.
 
     0.489
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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