Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Meso_2514Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: psp:PSPPH_2055 transcriptional regulator, GntR family. (234 aa)    
Predicted Functional Partners:
Meso_2513
2,3-dimethylmalate lyase; KEGG: bbr:BB4108 carboxyvinyl-carboxyphosphonate phosphorylmutase.
 
  
 0.831
Meso_2512
PFAM: MmgE/PrpD; KEGG: bba:Bd2500 2-methylcitrate dehydratase.
       0.777
Meso_3282
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: chy:CHY_0434 transcriptional regulator, GntR family.
  
  
 0.749
Meso_1948
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like Helix-turn-helix, type 11; KEGG: atc:AGR_L_3331 hypothetical protein.
  
  
 0.704
Meso_2520
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: sme:SMb20375 putative transcriptional regulator protein.
  
  
 0.628
Meso_2511
PFAM: protein of unknown function DUF112, transmembrane; KEGG: bja:blr3163 hypothetical protein.
       0.550
Meso_2509
PFAM: Uncharacterized protein UPF0065; KEGG: sme:SMb20724 putative tricarboxylic transport membrane protein.
       0.542
Meso_2510
KEGG: sco:SCO1139 integral membrane protein.
       0.542
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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