Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2520Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: sme:SMb20375 putative transcriptional regulator protein. (238 aa)    
Predicted Functional Partners:
Meso_2519
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: oih:OB3257 C4-dicarboxylate transport system C4-dicarboxylate-binding protein.
 
     0.771
Meso_0568
Transcriptional regulator, GntR family; PFAM: GCN5-related N-acetyltransferase regulatory protein GntR, HTH GntR-like; KEGG: reu:Reut_B5875 regulatory protein GntR, HTH:GntR, C-terminal.
  
  
 0.714
Meso_3552
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: sme:SMa0267 putative GntR-family regulator.
  
  
 0.705
Meso_3720
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_0073 transcriptional regulator, GntR family.
  
  
 0.691
Meso_1829
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: bja:bll6810 transcriptional regulatory protein.
  
  
 0.665
Meso_1061
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: bja:bll2319 transcriptional regulatory protein.
  
  
 0.648
Meso_2514
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: psp:PSPPH_2055 transcriptional regulator, GntR family.
  
  
 0.628
Meso_2517
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bbr:BB3422 putative inner membrane transport protein.
 
     0.608
Meso_2933
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: dar:Daro_3790 regulatory protein GntR, HTH:GntR, C-terminal.
  
  
 0.581
Meso_2518
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: oih:OB3255 C4-dicarboxylate transport system permease large protein.
 
     0.579
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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