Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2521PFAM: protein of unknown function DUF1185; KEGG: ret:RHE_PF00199 hypothetical protein. (196 aa)    
Predicted Functional Partners:
Meso_2525
PFAM: luciferase-like; KEGG: ret:RHE_PF00195 putative oxidoreductase protein.
 
     0.856
Meso_2522
KEGG: ret:RHE_PF00198 hypothetical protein.
 
     0.806
Meso_2523
PFAM: flavin reductase-like, FMN-binding; KEGG: ret:RHE_PF00197 probable nitrilotriacetate monooxygenase component B protein.
 
     0.744
Meso_2526
3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_PF00194 probable 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase protein.
 
     0.639
Meso_2527
PFAM: Carboxymuconolactone decarboxylase; KEGG: ret:RHE_PF00193 gamma-carboxymuconolactone decarboxylase protein.
 
     0.529
Meso_2528
PFAM: NIPSNAP domain containing protein; KEGG: atc:AGR_pAT_315 hypothetical protein.
 
     0.517
Meso_3765
PFAM: luciferase-like; KEGG: aci:ACIAD2543 conserved hypothetical protein; putative monooxygenase oxidoreductase protein.
 
     0.422
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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