Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_2528PFAM: NIPSNAP domain containing protein; KEGG: atc:AGR_pAT_315 hypothetical protein. (104 aa)    
Predicted Functional Partners:
Meso_2525
PFAM: luciferase-like; KEGG: ret:RHE_PF00195 putative oxidoreductase protein.
 
     0.832
Meso_2526
3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_PF00194 probable 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase protein.
 
     0.818
Meso_2527
PFAM: Carboxymuconolactone decarboxylase; KEGG: ret:RHE_PF00193 gamma-carboxymuconolactone decarboxylase protein.
       0.774
Meso_2523
PFAM: flavin reductase-like, FMN-binding; KEGG: ret:RHE_PF00197 probable nitrilotriacetate monooxygenase component B protein.
 
     0.736
Meso_2524
PFAM: aldehyde dehydrogenase; KEGG: atc:AGR_pAT_320 NADP-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.693
Meso_2522
KEGG: ret:RHE_PF00198 hypothetical protein.
 
     0.641
Meso_2521
PFAM: protein of unknown function DUF1185; KEGG: ret:RHE_PF00199 hypothetical protein.
 
     0.517
Meso_2529
Glycine betaine/L-proline ABC transporter, ATPase subunit; KEGG: atc:AGR_pAT_303 glycine betaine/L-proline transport ATP-binding protein ProV; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein ABC transporter related; SMART: ATPase.
       0.465
Meso_2530
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_304 high-affinity transport system for glycine betaine and proline.
       0.465
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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