Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_2542PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00671 histidine transport system permease ABC transporter protein. (300 aa)    
Predicted Functional Partners:
Meso_2541
PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMc00670 histidine transport ATP-binding ABC transporter protein.
 
 0.999
Meso_2543
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sme:SMc00672 histidine-binding periplasmic signal peptide protein.
 
 0.999
Meso_2529
Glycine betaine/L-proline ABC transporter, ATPase subunit; KEGG: atc:AGR_pAT_303 glycine betaine/L-proline transport ATP-binding protein ProV; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein ABC transporter related; SMART: ATPase.
 
 0.997
Meso_2531
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: atc:AGR_pAT_305 high-affinity transport system for glycine betaine and proline.
 
 0.993
Meso_2530
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_304 high-affinity transport system for glycine betaine and proline.
  
  
 
0.985
Meso_2977
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cya:CYA_2230 quaternary amine uptake ABC transporter (QAT) family, substrate-binding protein.
 
 
 0.975
Meso_2981
PFAM: ABC transporter related; SMART: ATPase; KEGG: sth:STH2630 glycine betaine/carnitine/choline ABC transporter ATP-binding protein.
  
 
 0.873
Meso_1757
PFAM: permease YjgP/YjgQ; KEGG: mlo:mll7866 hypothetical protein.
     
  0.856
Meso_1758
PFAM: permease YjgP/YjgQ; KEGG: mlo:mll7865 hypothetical protein.
     
  0.856
Meso_2851
PFAM: ABC-3; KEGG: jan:Jann_2082 ABC-3.
     
 0.819
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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