Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Meso_2567KEGG: bmb:BruAb1_0116 outer membrane protein, hypothetical. (234 aa)    
Predicted Functional Partners:
Meso_2915
Hypothetical protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 0.814
Meso_0939
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 0.791
Meso_0740
PFAM: Invasion associated locus B; KEGG: mlo:mll7488 hypothetical protein.
  
     0.717
Meso_3664
PFAM: protein of unknown function DUF1150; KEGG: mlo:msr3193 contains weak similarity to NADH oxidase.
  
     0.711
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
  
 0.703
Meso_1010
KEGG: mlo:mlr0912 hypothetical protein.
  
     0.701
Meso_1118
KEGG: sme:SMc02115 hypothetical unknown protein.
  
     0.682
Meso_0095
KEGG: bms:BR0308 hypothetical protein.
  
     0.657
Meso_2214
KEGG: mlo:mlr2817 hypothetical protein.
  
     0.645
Meso_0859
PFAM: ErfK/YbiS/YcfS/YnhG; KEGG: bmb:BruAb1_0586 hypothetical protein.
  
     0.615
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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