Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2569Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: ret:RHE_PC00043 putative transcriptional regulator protein, AsnC/GntR family. (251 aa)    
Predicted Functional Partners:
Meso_2357
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mlr7177 transcriptional regulator.
  
     0.759
Meso_2933
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: dar:Daro_3790 regulatory protein GntR, HTH:GntR, C-terminal.
  
     0.741
Meso_3759
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; KEGG: mlo:mlr2114 probable transcriptional regulator.
  
     0.666
Meso_3282
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: chy:CHY_0434 transcriptional regulator, GntR family.
  
  
 0.625
Meso_1948
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like Helix-turn-helix, type 11; KEGG: atc:AGR_L_3331 hypothetical protein.
  
  
 0.592
Meso_2520
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: sme:SMb20375 putative transcriptional regulator protein.
  
  
 0.568
Meso_0366
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mll6911 transcriptional regulator.
  
  
 0.495
Meso_2568
PFAM: dihydrodipicolinate synthetase; KEGG: rru:Rru_A2066 dihydrodipicolinate synthetase; Belongs to the DapA family.
       0.482
Meso_2570
Zn-dependent hydrolases of the beta-lactamase fold-like protein; KEGG: bth:BT1924 putative metal-dependent hydrolase.
       0.468
Meso_1867
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: pfo:Pfl_3228 regulatory protein GntR, HTH.
  
  
 0.402
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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