Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_2594PFAM: glycosyl transferase, group 1; KEGG: ret:RHE_CH03382 probable glycosyltransferase protein. (399 aa)    
Predicted Functional Partners:
Meso_2591
PFAM: glycosyl transferase, family 2; KEGG: ret:RHE_CH03387 probable glycosyltransferase protein.
 
  
 0.751
Meso_2590
PFAM: glycosyl transferase, group 1; KEGG: ret:RHE_CH03383 probable glycosyltransferase protein.
 
     0.683
Meso_2577
KEGG: rpa:RPA3345 hypothetical protein.
  
     0.646
Meso_2589
PFAM: sugar transferase; KEGG: ret:RHE_CH03385 exopolysaccharide production protein.
 
  
 0.618
Meso_1154
PFAM: sugar transferase; KEGG: mlo:mll8435 probable glycosyl transferase.
 
  
 0.608
Meso_2592
PFAM: lipopolysaccharide biosynthesis; KEGG: ret:RHE_CH03233 exopolysaccharide polymerization protein.
 
  
 0.592
Meso_2593
PFAM: polysaccharide export protein; KEGG: ret:RHE_CH01370 exopolysaccharide biosynthesis protein (OMA family outer membrane saccharide export protein).
  
  
 0.542
Meso_0653
PFAM: sugar transferase; KEGG: mlo:mll5252 exopolysaccharide production protein exoY.
 
  
 0.526
Meso_2127
PFAM: glycosyl transferase, family 8; KEGG: ret:RHE_CH03469 glycosyltransferase (sulfolipid biosynthesis) protein.
   
 0.483
Meso_2421
Maltooligosyl trehalose hydrolase; PFAM: glycoside hydrolase, family 13-like alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: rba:RB548 1,4-alpha-glucan branching enzyme.
   
 0.467
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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