Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2603PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: tcx:Tcr_1011 periplasmic ATP/GTP-binding protein. (331 aa)    
Predicted Functional Partners:
Meso_0301
PFAM: flagellar basal body rod protein protein of unknown function DUF1078-like; KEGG: mlo:mlr2907 flagellar basal-body rod protein flgF.
    
   0.531
Meso_2409
Hypothetical protein.
 
  
  0.530
Meso_1050
PFAM: NHL repeat; KEGG: bja:bll1368 hypothetical protein.
 
     0.512
Meso_2300
PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: fra:Francci3_2808 hypothetical protein.
  
     0.505
Meso_1056
PFAM: NHL repeat; KEGG: bja:bll1368 hypothetical protein.
  
     0.487
Meso_2605
PFAM: Pyrrolo-quinoline quinone; KEGG: bja:bll6220 putative alcohol dehydrogenase precursor.
 
   
 0.448
Meso_1237
Hypothetical protein.
    
  0.421
Meso_1487
KEGG: lpp:lpp0258 hypothetical protein.
    
  0.421
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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