Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Meso_2627PFAM: protein of unknown function DUF894, DitE major facilitator superfamily MFS_1; KEGG: rsp:RSP_3035 putative transporter, major facilitator superfamily (MFS). (410 aa)    
Predicted Functional Partners:
Meso_2628
PFAM: phenylalanine/histidine ammonia-lyase; KEGG: ret:RHE_CH00352 histidine ammonia-lyase protein.
       0.603
Meso_2580
TIGRFAM: amino acid adenylation domain; PFAM: beta-ketoacyl synthase AMP-dependent synthetase and ligase acyl transferase region condensation domain aminotransferase class-III phosphopantetheine-binding; KEGG: rpa:RPA3339 possible polyketide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.480
Meso_1920
PFAM: secretion protein HlyD; KEGG: mlo:mlr8231 efflux pump protein FarA.
 
 0.442
Meso_2625
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO2833 dipeptide ABC transporter, permease protein.
       0.413
Meso_2626
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO2834 dipeptide ABC trasnporter, permease protein.
       0.413
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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