Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_2630Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ret:RHE_CH00487 probable transcriptional regulator protein, LysR family. (386 aa)    
Predicted Functional Partners:
Meso_2631
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rpa:RPA4693 putative FMN oxidoreductase.
       0.701
Meso_2632
PFAM: phenylalanine/histidine ammonia-lyase; KEGG: sme:SMa0306 putative histidine ammonia-lyase.
       0.701
Meso_2629
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: mth:MTH269 argininosuccinate lyase.
       0.623
Meso_2633
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: sil:SPO2835 dipeptide ABC transporter, periplasmic dipeptide-binding protein.
       0.533
Meso_0498
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rpa:RPA4114 transcriptional regulator, LysR family.
  
     0.485
Meso_2466
PFAM: helix-turn-helix, AraC type; KEGG: pae:PA0248 probable transcriptional regulator.
  
  
 0.477
Meso_2639
PFAM: protein of unknown function DUF917; KEGG: ret:RHE_CH00349 hypothetical protein.
 
     0.461
Meso_0798
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bbr:BB0351 LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
     0.448
Meso_2641
PFAM: amidohydrolase; KEGG: ret:RHE_CH00351 probable allantoinase protein.
 
    0.440
Meso_2634
KEGG: sil:SPO2831 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; Belongs to the ABC transporter superfamily.
       0.437
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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