Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_2631PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rpa:RPA4693 putative FMN oxidoreductase. (418 aa)    
Predicted Functional Partners:
Meso_2632
PFAM: phenylalanine/histidine ammonia-lyase; KEGG: sme:SMa0306 putative histidine ammonia-lyase.
  
    0.773
Meso_2630
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ret:RHE_CH00487 probable transcriptional regulator protein, LysR family.
       0.701
Meso_3033
PFAM: electron transfer flavoprotein beta-subunit; KEGG: mlo:mlr3487 electron transfer flavoprotein beta chain, (ETFSS).
  
 
 0.694
Meso_2633
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: sil:SPO2835 dipeptide ABC transporter, periplasmic dipeptide-binding protein.
       0.584
Meso_2629
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: mth:MTH269 argininosuccinate lyase.
       0.568
Meso_3379
PFAM: transcription factor CarD; KEGG: mlo:mlr3857 transcriptional factor regulator.
   
    0.494
Meso_2634
KEGG: sil:SPO2831 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; Belongs to the ABC transporter superfamily.
       0.476
Meso_2635
KEGG: bja:blr3232 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; Belongs to the ABC transporter superfamily.
       0.476
Meso_2636
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO2833 dipeptide ABC transporter, permease protein.
       0.476
Meso_2637
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3030 ABC peptide/opine transporter, inner membrane subunit.
       0.476
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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