Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_2639PFAM: protein of unknown function DUF917; KEGG: ret:RHE_CH00349 hypothetical protein. (361 aa)    
Predicted Functional Partners:
Meso_2641
PFAM: amidohydrolase; KEGG: ret:RHE_CH00351 probable allantoinase protein.
 
     0.870
Meso_2640
TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20 peptidase dimerisation; KEGG: ret:RHE_CH00350 probable N-carbamoyl-L-amino acid amidohydrolase protein.
 
     0.821
Meso_1851
PFAM: Hydantoinase/oxoprolinase Hydantoinaseoxoprolinase-like; KEGG: atc:AGR_L_3530 hypothetical protein.
 
     0.736
Meso_2544
PFAM: amidohydrolase; KEGG: ret:RHE_CH00351 probable allantoinase protein.
 
     0.686
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
   
 0.581
Meso_2630
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ret:RHE_CH00487 probable transcriptional regulator protein, LysR family.
 
     0.461
Meso_2628
PFAM: phenylalanine/histidine ammonia-lyase; KEGG: ret:RHE_CH00352 histidine ammonia-lyase protein.
 
     0.456
Meso_0243
KEGG: hch:HCH_00681 hypothetical protein.
  
     0.421
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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