Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_2658TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rru:Rru_A3199 extracellular solute-binding protein, family 1. (350 aa)    
Predicted Functional Partners:
Meso_2660
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_1307 similar to ABC-type Fe3+ transport system permease component.
 
 
 0.973
Meso_0170
PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMc00784 putative iron binding protein.
     
 0.911
Meso_0827
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4775 putative iron(III)-transport system permease.
 
 
 0.904
Meso_0828
Hypothetical protein; KEGG: bbr:BB4774 putative iron(III)-binding periplasmic protein precursor.
     
  0.900
Meso_0169
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00775 putative iron(III) permease protein.
  
 
 0.888
Meso_1807
PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMc02068 putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.827
Meso_2659
PFAM: ABC transporter related; SMART: ATPase; KEGG: pub:SAR11_1337 spermidine/putrescine transport ATP-binding protein PotA.
  
  
 0.637
Meso_2657
PFAM: MmgE/PrpD; KEGG: cvi:CV1809 hypothetical protein.
       0.576
Meso_2656
Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation)-like protein; KEGG: sme:SMb21041 conserved putative protein, possibly related to processing of cell wall amino acids.
       0.491
Meso_3260
TIGRFAM: thiamine ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll3865 transport system permease protein.
  
  
 0.446
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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