Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_2664TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase Amidohydrolase 3; KEGG: bms:BR0278 D-hydantoinase. (485 aa)    
Predicted Functional Partners:
Meso_2055
Dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine dehydrogenase (NADP+); TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: sme:SMc01815 dihydropyrimidine dehydrogenase.
 
 0.993
Meso_2043
TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; KEGG: mlo:mll1631 N-carbamoyl-beta-alanine amidohydrolase.
 
 
 0.982
Meso_2057
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mlo:mll1646 glutamate synthase beta subunit.
 
 
 0.978
Meso_2546
TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; KEGG: ret:RHE_CH00350 probable N-carbamoyl-L-amino acid amidohydrolase protein.
 
 
 0.967
Meso_2640
TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20 peptidase dimerisation; KEGG: ret:RHE_CH00350 probable N-carbamoyl-L-amino acid amidohydrolase protein.
 
 
 0.967
pyrB
TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: mlo:mlr0686 aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
 
 0.924
carB
TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain, oligomerisation Carbamoyl-phosphate synthetase large chain-like MGS-like; KEGG: mlo:mlr2517 carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
  
 
 0.717
pyrD
Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 
 0.716
Meso_2047
KEGG: sme:SMc01827 hypothetical protein.
 
    0.715
carA
TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I Carbamoyl-phosphate synthase, small chain; KEGG: mlo:mlr2489 carbamoyl-phosphate synthetase small subunit; Belongs to the CarA family.
  
  
 0.709
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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