Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_2756KEGG: sme:SMb20831 putative polysaccharide export-assoiated protein. (400 aa)    
Predicted Functional Partners:
Meso_2757
PFAM: ABC-2 type transporter; KEGG: bpe:BP1623 putative polysialic acid transport protein.
 
 
 0.998
Meso_2758
PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMb20832 putative cell surface polysaccharide export ABC-2 transporter ATP-binding protein.
 
 
 0.996
Meso_2755
PFAM: Capsule polysaccharide biosynthesis; KEGG: syd:Syncc9605_2216 possible polysaccharide export protein.
 
  
 0.989
Meso_2754
PFAM: polysaccharide export protein; KEGG: bpm:BURPS1710b_3301 WcbC.
 
  
 0.975
Meso_2753
PFAM: Capsule polysaccharide biosynthesis; KEGG: ecc:c3691 kpsS protein.
 
 
 
 0.942
Meso_2759
KEGG: nar:Saro_0730 hypothetical protein.
 
    0.817
Meso_0490
PFAM: ABC transporter related; SMART: ATPase; KEGG: cjk:jk2037 ABC-type polysaccharide/polyol phosphate transport system ATPase component.
  
  
 0.720
Meso_3694
PFAM: ABC transporter related; SMART: ATPase; KEGG: pst:PSPTO1075 O-antigen ABC transporter, ATP-binding protein, putative.
  
  
 0.720
Meso_0491
PFAM: ABC-2 type transporter; KEGG: cef:CE0178 putative O-antigen export system permease protein.
  
  
 0.696
Meso_3693
PFAM: ABC-2 type transporter; KEGG: neu:NE0472 ABC 2 transport system integral membrane protein.
  
  
 0.696
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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