Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2768PFAM: metallophosphoesterase; KEGG: sme:SMb20081 hypothetical protein. (240 aa)    
Predicted Functional Partners:
Meso_2769
KEGG: ret:RHE_PB00048 hypothetical protein.
 
     0.953
Meso_0468
Membrane protein-like protein; KEGG: ava:Ava_2290 hypothetical protein.
  
     0.664
Meso_2770
PFAM: Cold-shock protein, DNA-binding; KEGG: ava:Ava_4090 cold-shock DNA-binding domain protein.
 
     0.552
Meso_2767
KEGG: bmb:BruAb1_0531 hypothetical protein.
       0.425
Meso_0331
KEGG: sil:SPO0259 membrane protein, putative.
  
     0.415
Meso_2692
KEGG: ade:Adeh_0874 hypothetical protein.
  
     0.408
Meso_3528
PFAM: Erythromycin esterase; KEGG: ppu:PP3231 hypothetical protein.
  
     0.406
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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