Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_2789Hypothetical protein. (91 aa)    
Predicted Functional Partners:
Meso_2790
KEGG: sme:SMb21371 hypothetical membrane protein.
       0.773
Meso_2791
PFAM: cytochrome c oxidase, subunit I; KEGG: sme:SMb21370 putative cytochrome c oxidase chain I protein; Belongs to the heme-copper respiratory oxidase family.
       0.773
Meso_2792
PFAM: cytochrome c oxidase, subunit II cytochrome c, class I; KEGG: sme:SMb21368 putative cytochrome c oxidase chain II protein.
       0.773
Meso_2793
PFAM: cytochrome c, class I; KEGG: sme:SMb21367 putative cytochrome c class I protein, probably cytochrome c4.
       0.773
Meso_2794
KEGG: sme:SMb21366 hypothetical membrane protein.
       0.773
Meso_2788
PFAM: CBS domain containing protein; KEGG: ret:RHE_CH02435 putative inosine-5'-monophosphate dehydrogenase protein.
       0.497
Meso_2795
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: bmb:BruAb1_0302 transporter, hypothetical; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.491
Meso_2787
Hypothetical protein.
       0.468
Meso_2796
PFAM: acriflavin resistance protein; KEGG: bms:BR0277 AcrB/AcrD/AcrF multidrug efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.466
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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