Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xylBTIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: mlo:mlr5033 xylulokinase. (484 aa)    
Predicted Functional Partners:
xylA
TIGRFAM: xylose isomerase; PFAM: Xylose isomerase-like TIM barrel; KEGG: mlo:mlr5036 xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.997
Meso_0005
PFAM: ribulose-phosphate 3-epimerase; KEGG: mlo:mlr4760 pentose(ribulose)-5-phosphate-3-epimerase.
 
  
 0.942
Meso_3949
PFAM: protein of unknown function DUF1498; KEGG: mlo:mlr8329 hypothetical protein.
 
  
  0.928
Meso_3691
PFAM: Amylo-alpha-1,6-glucosidase; KEGG: nwi:Nwi_2111 amylo-alpha-1,6-glucosidase.
  
   0.697
Meso_3440
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
 
 0.681
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
 
 0.582
Meso_3617
PFAM: Transketolase-like; KEGG: mlo:mll5765 transketolase.
    
 0.568
Meso_0995
PFAM: Xylose isomerase-like TIM barrel; KEGG: sme:SMc03130 hypothetical protein.
  
 
 0.552
Meso_3618
Transketolase subunit B; PFAM: Transketolase, central region Transketolase-like; KEGG: psp:PSPPH_1255 transketolase, C-terminal subunit, putative.
    
 0.544
Meso_2818
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: mlo:mlr5162 glycerate dehydrogenase.
  
  
 0.534
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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