Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Meso_2828PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: mlo:mll5129 hypothetical protein. (198 aa)    
Predicted Functional Partners:
allA
Ureidoglycolate hydrolase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.
       0.834
Meso_2830
PFAM: protein of unknown function DUF861, cupin_3 Cupin 2, conserved barrel; KEGG: mlo:mll5131 hypothetical protein.
       0.832
Meso_2831
PFAM: polysaccharide deacetylase; KEGG: mlo:mll5132 hypothetical protein.
       0.805
hisE
PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: mlo:mlr5018 phosphoribosyl-ATP pyrophosphatase.
   
  
 0.674
vapC
PilT protein-like protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.588
Meso_2827
PFAM: SpoVT/AbrB-like; KEGG: xac:XACb0060 virulence plasmid protein.
       0.588
Meso_2832
PFAM: Transthyretin; KEGG: mlo:mlr5133 hypothetical protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
       0.550
Meso_1498
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bmb:BruAb1_1372 hypothetical protein.
 
     0.537
Meso_2671
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: sme:SMb20170 probable glutathione-dependent formaldehyde dehydrogenase protein; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
    0.528
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.495
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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