Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2843PFAM: intradiol ring-cleavage dioxygenase; KEGG: ttj:TTHA1511 putative catechol 1,2-dioxygenase. (233 aa)    
Predicted Functional Partners:
Meso_2841
WD-40 repeat-containing protein; KEGG: mlo:mll5154 hypothetical protein.
       0.509
Meso_2842
PFAM: cobalamin synthesis protein, P47K cobalamin synthesis CobW-like; KEGG: sme:SMc02978 hypothetical protein.
       0.509
Meso_0782
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase Xylose isomerase-like TIM barrel; KEGG: ret:RHE_PC00215 putative 4-hydroxyphenylpyruvate dioxygenase protein.
 
   
 0.503
Meso_3537
PFAM: Cupin 2, conserved barrel; KEGG: bja:bll6423 hypothetical protein.
  
   
 0.427
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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