Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2853PFAM: periplasmic solute binding protein; KEGG: sil:SPO3366 zinc/manganese/iron ABC transporter, periplasmic zinc/manganese/iron-binding protein; Belongs to the bacterial solute-binding protein 9 family. (321 aa)    
Predicted Functional Partners:
Meso_2851
PFAM: ABC-3; KEGG: jan:Jann_2082 ABC-3.
 
 0.999
Meso_2850
PFAM: ABC-3; KEGG: jan:Jann_2083 ABC-3.
 
 0.998
Meso_2852
PFAM: ABC transporter related; SMART: ATPase; KEGG: sil:SPO3365 zinc/manganese/iron ABC transporter, ATP-binding protein.
 
 
 0.998
Meso_4004
PFAM: ABC-3; KEGG: ret:RHE_CH02710 zinc uptake ABC transporter, permease protein.
 
 0.969
znuC
ABC transporter related protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
  
 0.827
Meso_2977
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cya:CYA_2230 quaternary amine uptake ABC transporter (QAT) family, substrate-binding protein.
     
 0.762
rpsN
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.707
Meso_2842
PFAM: cobalamin synthesis protein, P47K cobalamin synthesis CobW-like; KEGG: sme:SMc02978 hypothetical protein.
  
  
 0.693
Meso_3058
PFAM: cobalamin synthesis protein, P47K cobalamin synthesis CobW-like; KEGG: bms:BR2035 cobalamin synthesis protein/P47K family protein.
  
  
 0.693
rpmB
PFAM: ribosomal protein L28; KEGG: bmb:BruAb1_1990 RpmB, ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.690
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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