Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Meso_2854Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: jan:Jann_1945 transcriptional regulator, LacI family. (391 aa)    
Predicted Functional Partners:
Meso_2744
PFAM: glutamine amidotransferase, class-II glutamate synthase, alpha subunit-like ferredoxin-dependent glutamate synthase glutamate synthase; KEGG: mlo:mll3030 glutamate synthase (NADPH) large chain.
    
 
 0.849
Meso_2855
Trehalose-binding protein / sucrose-binding protein / maltose-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: ret:RHE_CH00696 alpha-glucoside ABC transporter, substrate-binding protein.
 
   
 0.819
Meso_2857
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03063 alpha-glucosides transport system permease ABC transporter protein.
 
   
 0.732
Meso_2856
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_2872 ABC alpha-glucoside transporter, inner membrane subunit AglF.
 
   
 0.723
Meso_3575
TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: mlo:msl5090 phosphocarrier protein HPr.
   
 
 0.720
ribB
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
   0.589
Meso_3687
PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: rpa:RPA4759 glycosyl hydrolase, family 13.
 
  
 0.465
Meso_1942
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like; KEGG: ppu:PP3761 sensor histidine kinase/response regulator.
   
 
 0.442
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: mlo:mlr5033 xylulokinase.
 
 
 
 0.442
Meso_0678
PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: mlo:mll5047 hypothetical protein.
  
   
 0.435
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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