Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2867PFAM: protein of unknown function DUF534; KEGG: bmb:BruAb1_2028 ABC transporter, periplasmic substrate-binding protein, hypothetical. (316 aa)    
Predicted Functional Partners:
Meso_2868
PFAM: inner-membrane translocator; KEGG: atc:AGR_C_4842 probable ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.996
Meso_2869
PFAM: ABC transporter related; SMART: ATPase; KEGG: atc:AGR_C_4841 probable ATP-binding component of ABC transporter.
 
    0.917
Meso_1569
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: mlo:mll1107 outer membrane protein, nodT candidate.
   
 
  0.759
Meso_2283
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: bja:bll7986 putative HlyD family secretion protein.
    
  0.636
Meso_2287
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sil:SPO1526 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
    
  0.636
Meso_2619
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: mlo:mlr3647 RND efflux membrane fusion protein precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
    
  0.636
Meso_2795
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: bmb:BruAb1_0302 transporter, hypothetical; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
    
  0.636
Meso_3333
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: mlo:mll3833 similar to periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
    
  0.636
Meso_0129
PFAM: secretion protein HlyD; KEGG: ret:RHE_CH03250 probable protein secretion protein, HlyD family.
    
  0.632
Meso_0617
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: mlo:mll2582 metalloprotease transporter.
    
  0.632
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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