Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_2902PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: jan:Jann_0872 TRAP dicarboxylate transporter-DctM subunit. (420 aa)    
Predicted Functional Partners:
Meso_0788
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bcl:ABC4078 C4-dicarboxylate transport system permease small protein.
 
 0.880
Meso_3715
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bbr:BB2985 hypothetical protein.
 
 
 0.849
Meso_0789
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sme:SMb21438 putative C4-dicarboxylate transport system, C4-dicarboxylate-binding protein precursor signal peptide.
 
 
 0.848
Meso_2519
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: oih:OB3257 C4-dicarboxylate transport system C4-dicarboxylate-binding protein.
 
 
 0.847
Meso_3614
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:blr4511 probable ABC transporter substrate-binding protein.
 
 
 0.844
Meso_2904
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: jan:Jann_0870 TRAP dicarboxylate transporter-DctP subunit.
 
 
 0.840
Meso_2489
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: eba:ebA5362 predicted TRAP dicarboxylate transporter, DctP subunit.
 
 
 0.725
Meso_2903
KEGG: jan:Jann_2036 hypothetical protein.
 
     0.693
Meso_2935
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: jan:Jann_2035 TRAP-type C4-dicarboxylate transport system periplasmic component-like.
 
 
 0.692
Meso_3615
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: atc:AGR_L_113 hypothetical protein.
 
0.647
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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