Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2929PFAM: regulatory protein, MarR; KEGG: eba:ebA5682 transcriptional regulatory protein,MarR family. (315 aa)    
Predicted Functional Partners:
Meso_3044
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR; KEGG: eba:ebA5386 bacterial regulatory protein, MarR.
  
     0.594
Meso_1089
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR; KEGG: reu:Reut_B3774 regulatory protein, MarR.
  
     0.502
Meso_0051
Transcriptional regulator, IclR family; PFAM: Helix-turn-helix, type 11; SMART: regulatory proteins, IclR; KEGG: dar:Daro_0897 regulatory proteins, IclR.
  
    0.440
Meso_2930
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ttj:TTHA0466 alcohol dehydrogenase.
       0.436
Meso_1942
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like; KEGG: ppu:PP3761 sensor histidine kinase/response regulator.
  
  
 0.410
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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