STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2936KEGG: jan:Jann_2036 hypothetical protein. (182 aa)    
Predicted Functional Partners:
Meso_2935
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: jan:Jann_2035 TRAP-type C4-dicarboxylate transport system periplasmic component-like.
 
     0.945
Meso_2937
PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: jan:Jann_2037 TRAP dicarboxylate transporter-DctM subunit.
     0.827
Meso_2904
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: jan:Jann_0870 TRAP dicarboxylate transporter-DctP subunit.
 
     0.778
Meso_2938
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bur:Bcep18194_C7653 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase.
  
    0.612
Meso_2490
KEGG: eba:ebB188 hypothetical protein.
  
     0.601
Meso_2934
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bur:Bcep18194_C7651 glyoxalase/bleomycin resistance protein/dioxygenase.
       0.533
Meso_0050
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: jan:Jann_0661 TRAP dicarboxylate transporter-DctP subunit.
 
     0.487
Meso_2939
PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme-like TPP binding region; KEGG: eba:ebA5686 acetolactate synthase large subunit.
       0.485
Meso_3044
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR; KEGG: eba:ebA5386 bacterial regulatory protein, MarR.
  
     0.483
Meso_2933
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: dar:Daro_3790 regulatory protein GntR, HTH:GntR, C-terminal.
       0.471
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.