Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2967PFAM: regulatory proteins, IclR; KEGG: mta:Moth_0375 transcriptional regulator, IclR family. (276 aa)    
Predicted Functional Partners:
Meso_0408
PFAM: regulatory proteins, IclR; KEGG: mta:Moth_1780 transcriptional regulator, IclR family.
  
     0.774
Meso_0818
Transcriptional regulator, IclR family; PFAM: regulatory proteins, IclR; KEGG: reu:Reut_B3600 regulatory protein, IclR.
  
     0.774
Meso_3645
Transcriptional regulator, IclR family; PFAM: regulatory proteins, IclR; KEGG: reu:Reut_D6477 regulatory protein, IclR.
  
     0.774
Meso_2307
Transcriptional regulator, IclR family; PFAM: regulatory proteins, IclR Helix-turn-helix, type 11; KEGG: sma:SAV3701 putative IclR-family transcriptional regulator.
  
     0.773
Meso_3296
PFAM: regulatory proteins, IclR; KEGG: bur:Bcep18194_B0283 transcriptional regulator, IclR family.
  
     0.772
Meso_3613
Transcriptional regulator, IclR family; PFAM: regulatory proteins, IclR; KEGG: atc:AGR_L_119 hypothetical protein.
  
     0.765
Meso_3303
Transcriptional regulator, IclR family; PFAM: regulatory proteins, IclR Helix-turn-helix, type 11; KEGG: sth:STH2538 transcriptional regulator.
  
     0.758
Meso_2965
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: reu:Reut_C6315 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.531
Meso_2966
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB2724 probable short-chain dehydrogenase.
       0.531
Meso_2964
KEGG: tfu:Tfu_1304 similar to ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components.
       0.449
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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