Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2993PFAM: peptidase M23B; KEGG: bms:BR1861 peptidase, M23/M37 family. (645 aa)    
Predicted Functional Partners:
Meso_0883
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; KEGG: mlo:mll7657 penicillin-binding protein.
  
   
 0.641
Meso_1708
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; KEGG: mlo:mlr0215 penicillin-binding protein.
 
   
 0.608
Meso_3986
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; KEGG: mlo:mll3238 penicillin-binding protein.
  
   
 0.601
Meso_0949
Signal peptidase I. Serine peptidase. MEROPS family S26A; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: mlo:mlr7763 signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.595
Meso_1460
KEGG: mlo:mll0525 hypothetical protein.
  
     0.586
Meso_1408
KEGG: bmf:BAB1_1043 hypothetical protein.
 
     0.571
Meso_0939
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
   
 0.556
Meso_1812
PFAM: Sporulation related; KEGG: bme:BMEI1088 soluble lytic murein transglycosylase.
 
  
 0.550
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
  
 0.532
Meso_3090
PFAM: protein of unknown function DUF214; KEGG: mlo:mlr3523 similar to cell division protein FtsX.
 
  
 0.517
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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