Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_2994PFAM: ErfK/YbiS/YcfS/YnhG; KEGG: mlo:mll3427 hypothetical protein. (490 aa)    
Predicted Functional Partners:
Meso_3518
PFAM: ErfK/YbiS/YcfS/YnhG; KEGG: sme:SMc01200 hypothetical protein.
  
     0.566
Meso_4038
PFAM: ErfK/YbiS/YcfS/YnhG; KEGG: bms:BR0139 lipoprotein, putative.
  
     0.566
clpB
ATPase AAA-2; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.
       0.555
Meso_3019
KEGG: mlo:mlr3471 hypothetical protein.
  
     0.547
Meso_0859
PFAM: ErfK/YbiS/YcfS/YnhG; KEGG: bmb:BruAb1_0586 hypothetical protein.
  
     0.543
Meso_2170
KEGG: mlo:mll2721 hypothetical protein.
  
     0.517
Meso_0426
KEGG: mlo:mlr8251 hypothetical protein.
  
     0.490
Meso_2995
PFAM: protein of unknown function DUF419; KEGG: mlo:mll3428 hypothetical protein.
       0.483
Meso_0312
KEGG: atc:AGR_C_1076 hypothetical protein.
  
     0.436
Meso_0694
PFAM: cell wall hydrolase, SleB; KEGG: mlo:mlr7408 hypothetical protein.
  
     0.428
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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