Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_3003PFAM: protein of unknown function DUF1178; KEGG: bms:BR1874 hypothetical protein. (141 aa)    
Predicted Functional Partners:
Meso_3004
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mlo:mll3450 similar to nitrilase, nitrilase 1 like protein.
       0.838
Meso_3005
Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
       0.838
Meso_3006
PFAM: phosphoribosyltransferase; KEGG: mlo:mll3453 hypothetical protein.
       0.741
Meso_3007
PFAM: Methyltransferase type 11; KEGG: mlo:mlr3455 hypothetical protein.
       0.565
Meso_3071
Cobaltochelatase CobT subunit; KEGG: mlo:mll3561 CobT protein; TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase, CobT subunit; SMART: von Willebrand factor, type A.
  
     0.476
Meso_0189
PFAM: Uncharacterised conserved protein UCP032146; KEGG: bmb:BruAb1_0279 hypothetical protein; Belongs to the UPF0262 family.
  
     0.402
Meso_3069
TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: bme:BMEI0049 CobS protein.
  
     0.402
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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