Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_3018PFAM: polysaccharide biosynthesis protein; KEGG: mlo:mlr3470 similar to polysaccharide biosynthesis related protein. (468 aa)    
Predicted Functional Partners:
Meso_3019
KEGG: mlo:mlr3471 hypothetical protein.
  
 0.926
Meso_1157
TIGRFAM: exopolysaccharide transport protein family; PFAM: lipopolysaccharide biosynthesis; KEGG: mlo:mlr8439 succinoglycan transport protein ExoP.
 
  
 0.840
Meso_1153
KEGG: mlo:mll8434 hypothetical protein.
 
  
 0.838
Meso_1155
PFAM: glycosyl transferase, group 1; KEGG: mlo:mll8436 putative transferase.
 
  
 0.828
Meso_1154
PFAM: sugar transferase; KEGG: mlo:mll8435 probable glycosyl transferase.
 
  
 0.806
Meso_0140
PFAM: polysaccharide deacetylase; KEGG: atc:AGR_L_1972 hypothetical protein.
 
   
 0.777
Meso_1158
KEGG: mlo:mll8447 hypothetical protein.
 
  
 0.771
Meso_2762
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: mlo:mlr7552 dTDP-D-glucose-4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.723
Meso_2761
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.722
Meso_1725
PFAM: type IV pilus assembly PilZ; KEGG: mlo:mll0185 hypothetical protein.
  
     0.709
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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