Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3020TIGRFAM: conserved repeat domain; KEGG: sme:SMc01710 hypothetical protein. (1482 aa)    
Predicted Functional Partners:
Meso_1515
TIGRFAM: conserved repeat domain; KEGG: sme:SMc01710 hypothetical protein.
  
     0.761
Meso_1514
KEGG: sme:SMc01710 hypothetical protein.
  
     0.748
Meso_1513
TIGRFAM: conserved repeat domain; KEGG: sme:SMc01711 hypothetical protein.
 
     0.725
Meso_1518
TIGRFAM: conserved repeat domain; KEGG: sme:SMc01709 hypothetical signal peptide protein.
 
     0.684
Meso_2063
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: rsp:RSP_2402 putative TonB dependent vitamin B12 outer membrane receptor.
    
  0.580
Meso_1440
TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: mlo:mlr1155 heme acquisition protein hasR.
    
 
 0.540
Meso_2102
TIGRFAM: outer membrane autotransporter barrel domain autotransporter-associated beta strand repeat protein; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin Autotransporter beta-domain; KEGG: psb:Psyr_3733 outer membrane autotransporter barrel.
 
 0.488
Meso_3473
PFAM: protein of unknown function DUF255; KEGG: mlo:mlr4484 hypothetical protein.
    
   0.463
Meso_2414
TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: rsp:RSP_3667 transcriptional regulator, AraC family with parallel beta-helix repeat.
  
     0.450
Meso_2754
PFAM: polysaccharide export protein; KEGG: bpm:BURPS1710b_3301 WcbC.
  
  
 0.400
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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