Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3024PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mlo:mll3477 hypothetical protein. (185 aa)    
Predicted Functional Partners:
Meso_3025
PFAM: HhH-GPD; KEGG: bmb:BruAb1_1634 base-excision DNA repair protein.
 
     0.628
Meso_2148
KEGG: mlo:mll2674 hypothetical protein.
  
    0.580
Meso_3026
PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: bmb:BruAb1_1635 tRNA synthetase, class I; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.477
Meso_0763
PFAM: DNA methylase N-4/N-6; KEGG: mlo:mlr7520 adenine DNA methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.468
Meso_1885
PFAM: phage Terminase; KEGG: nwi:Nwi_1472 phage terminase.
  
  
 0.448
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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