Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3030KEGG: ret:RHE_CH03789 hypothetical protein. (66 aa)    
Predicted Functional Partners:
Meso_3031
TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: mlo:mlr3485 hypothetical protein; Belongs to the Cob(I)alamin adenosyltransferase family.
  
    0.781
Meso_2738
KEGG: mlo:mlr3024 hypothetical protein.
  
     0.726
Meso_3029
PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr3482 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.718
Meso_1153
KEGG: mlo:mll8434 hypothetical protein.
  
     0.716
Meso_3018
PFAM: polysaccharide biosynthesis protein; KEGG: mlo:mlr3470 similar to polysaccharide biosynthesis related protein.
  
     0.707
Meso_1725
PFAM: type IV pilus assembly PilZ; KEGG: mlo:mll0185 hypothetical protein.
  
     0.702
Meso_3019
KEGG: mlo:mlr3471 hypothetical protein.
  
     0.696
Meso_0882
PFAM: protein of unknown function DUF1214; KEGG: mlo:mll7656 hypothetical protein.
  
     0.690
Meso_1158
KEGG: mlo:mll8447 hypothetical protein.
  
     0.688
Meso_3032
PFAM: Rhomboid-like protein; KEGG: atc:AGR_L_2465 hypothetical protein.
       0.669
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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