Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3032PFAM: Rhomboid-like protein; KEGG: atc:AGR_L_2465 hypothetical protein. (237 aa)    
Predicted Functional Partners:
Meso_3031
TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: mlo:mlr3485 hypothetical protein; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.750
tatA
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.695
Meso_1709
PFAM: cell wall hydrolase/autolysin; KEGG: mlo:mlr0213 N-acetylmuramoyl-L-alanine amidase.
   
   0.683
Meso_3030
KEGG: ret:RHE_CH03789 hypothetical protein.
       0.669
tatB
Twin-arginine translocation protein, TatB subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
   
 
 0.599
Meso_3029
PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr3482 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.580
Meso_3196
PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: mlo:mll3954 hypothetical protein.
  
  
 0.574
Meso_3033
PFAM: electron transfer flavoprotein beta-subunit; KEGG: mlo:mlr3487 electron transfer flavoprotein beta chain, (ETFSS).
       0.531
Meso_3034
PFAM: electron transfer flavoprotein beta-subunit electron transfer flavoprotein, alpha subunit; KEGG: bmb:BruAb1_1946 EtfA, electron transfer flavoprotein, alpha subunit.
     
 0.507
Meso_3028
TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: mlo:mll3481 contains similarity to transporter (YfkH).
       0.452
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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