Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3044Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR; KEGG: eba:ebA5386 bacterial regulatory protein, MarR. (165 aa)    
Predicted Functional Partners:
Meso_2929
PFAM: regulatory protein, MarR; KEGG: eba:ebA5682 transcriptional regulatory protein,MarR family.
  
     0.594
Meso_3045
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: mag:amb4454 L-lactate dehydrogenase and related alpha-hydroxy acid dehydrogenase.
  
  
 0.583
Meso_3046
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: ret:RHE_PF00381 putative mandelate racemase protein.
       0.580
Meso_2490
KEGG: eba:ebB188 hypothetical protein.
  
     0.507
Meso_2573
TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase, FAD-binding; KEGG: reu:Reut_B5020 aromatic-ring hydroxylase.
  
    0.496
Meso_2936
KEGG: jan:Jann_2036 hypothetical protein.
  
     0.483
Meso_2903
KEGG: jan:Jann_2036 hypothetical protein.
  
     0.482
Meso_3047
PFAM: Uncharacterized protein UPF0065; KEGG: bcl:ABC3606 hypothetical protein.
 
     0.482
Meso_0782
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase Xylose isomerase-like TIM barrel; KEGG: ret:RHE_PC00215 putative 4-hydroxyphenylpyruvate dioxygenase protein.
 
    0.481
Meso_2904
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: jan:Jann_0870 TRAP dicarboxylate transporter-DctP subunit.
  
     0.454
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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