Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3056TIGRFAM: amidohydrolase; PFAM: peptidase M20 peptidase dimerisation; KEGG: mlo:mlr3583 hippurate hydrolase. (387 aa)    
Predicted Functional Partners:
Meso_3057
PFAM: beta-lactamase peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: bme:BMEI0035 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
       0.527
Meso_3058
PFAM: cobalamin synthesis protein, P47K cobalamin synthesis CobW-like; KEGG: bms:BR2035 cobalamin synthesis protein/P47K family protein.
       0.527
dapD
TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; PFAM: transferase hexapeptide repeat; KEGG: sme:SMc01732 probable 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase protein; Belongs to the transferase hexapeptide repeat family.
  
  
 0.425
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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