Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Meso_3057PFAM: beta-lactamase peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: bme:BMEI0035 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (382 aa)    
Predicted Functional Partners:
Meso_3058
PFAM: cobalamin synthesis protein, P47K cobalamin synthesis CobW-like; KEGG: bms:BR2035 cobalamin synthesis protein/P47K family protein.
     
 0.838
Meso_3056
TIGRFAM: amidohydrolase; PFAM: peptidase M20 peptidase dimerisation; KEGG: mlo:mlr3583 hippurate hydrolase.
       0.527
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
  
    0.462
Meso_2013
PFAM: penicillin-binding protein, transpeptidase Penicillin-binding protein, dimerisation domain; KEGG: mlo:mll1561 penicillin-binding protein.
 
  
 0.435
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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